GenomicHistogram constructor

Usage

new_GenomicHistogram(
  histogram_data = NULL,
  interval_start = NULL,
  interval_end = NULL,
  region_id = NULL,
  bin_width = NULL,
  chr = NULL,
  strand = NULL,
  intron_start = NULL,
  intron_end = NULL,
  consecutive_start = NULL,
  consecutive_end = NULL
)

Arguments

histogram_data: vector of counts/density
interval_start: integer vector representing the starts of intervals
interval_end: integer vector representing the ends of intervals
region_id: character identifier for the region of interest
bin_width: integer width of histogram bins, if missing, estimated from interval_start and interval_end
chr: chromosome name
strand: strand
intron_start: integer vector representing the starts of introns
intron_end: integer vector representing the ends of introns
consecutive_start: start of intervals, integer vector representing an intronless set of bins - defaults to starting at 1
consecutive_end: end of intervals, integer vector representing an intronless set of bins - defaults to starting at bin_width

Value

A GenomicHistogram object