Changelog

Source: NEWS.md

HistogramZoo v1.4.0

[1.4.1] - 2023-05-02

Added

• ModelFit class to allow pretty-printing of fit_distributions results

Fixed

• Bugs associated with fitting truncated distributions

[1.4.0] - 2023-04-19

Added

• S3 methods to allow numeric/Histogram/GenomicHistogram input in key segment_and_fit functions Pull #121
  • consecutive_start and consecutive_end for GenomicHistogram to keep track of disjoint intervals
  • shifted gamma function to allow for non-zero starts

Changed

• Added summary statistics estimation for GenomicHistogram objects Pull #124
  • Added bin_width and midpoint estimation for Histogram and GenomicHistogram objects
• Enforcing continuity of bins in Histogram and GenomicHistogram objects when subsetting Pull #125

Fixed

• Fix vignette/README/image file paths for pkgdown Pull #115

HistogramZoo v1.3.0

Added

• Added summary statistics (mean, sd, var, skew) estimation from histogram objects Pull #113

Changed

• Enforcing bin width and addition of intron-traversing bins in GenomicHistogram Pull #108

HistogramZoo v1.2.0

Added

• Added a classic histogram plotting function Pull #111

HistogramZoo v1.1.0

Added

• Maxiumum likelihood estimation for distribution parameters Pull #97
• A vignette! Pull #81
• Added gamma_flip as an available distribution Pull #62

Changed

• New rules for Histogram and GenomicHistogram Pull #76
  • Histogram uses a strictly continuous Base 0 system while GenomicHistogram uses a potentially disjoint Base 1 system
  • Both are restricted to having a fixed bin_width in (n-1) bins
• Add pkgdown build on new release Pull #56
• Updated find_consensus_model to include user-specified weights and metric prioritization & addition of new RRA method Pull #53

Fixed

• Bug in segment_and_fit - finer segmentation is required to initialize meaningful_gaps_local Pull #73
• Refactored create_trackplot to use BoutrosLab.plotting.general::create.scatterplot as a base function thus increasing efficiency Pull #71
• Refactored find_uniform_segment to reduce code redundancy Pull #59

HistogramZoo v1.0.0

Added

• First release!