Outputs
| Output | Description |
|---|---|
<aligner>_<GATK>_<dataset_id>_<sample_id>.bam |
Post-processes BAM |
<aligner>_<GATK>_<dataset_id>_<sample_id>.bam.sha512 |
Post-processes BAM SHA512 checksum |
<aligner>_<GATK>_<dataset_id>_<sample_id>.bam.bai |
Post-processes BAM index |
<aligner>_<GATK>_<dataset_id>_<sample_id>.bam.bai.sha512 |
Post-processes BAM index SHA512 checksum |
report.html, timeline.html and trace.txt |
Nextflow report, timeline and trace files |
*.command.* |
Process specific logging files created by nextflow |