Outputs
| Output | Description |
|---|---|
{SAMtools-version}_{dataset_id}_{sample_id}_stats.txt |
SAMtools stats results |
{Picard-version}_{dataset_id}_{sample_id}_wgs-metrics.txt |
Picard CollectWgsMetrics results |
{Qualimap-version}_{dataset_id}_{sample_id}_stats |
Directory of Qualimap results, including, genome_results.txt and either .pdf or .html and supporting directories |