Testing and Validation

Test Data Set

Data Set Run Configuration YAML input Output Dir Normal Sample Tumor Sample
A-mini TWGSAMIN000001-T003-S03-F /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/unreleased/mmootor-replace-input-csv-with-yaml/TWGSAMIN000001-T003-S03-F.config /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/input/yaml/call-sSV-input-TWGSAMIN000001-T003-S03-F.yaml /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/unreleased/mmootor-replace-input-csv-with-yaml/TWGSAMIN000001-T003-S03-F/ /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/input/data/TWGSAMIN000001-N003-S03-F.bam /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/input/data/TWGSAMIN000001-T003-S03-F.bam
ILHNLNEV000009 /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/unreleased/mmootor-replace-input-csv-with-yaml/ILHNLNEV000009-T002-L01-F_F32.config /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/unreleased/mmootor-replace-input-csv-with-yaml/ILHNLNEV000009-T002-L01-F_F32.yaml /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/unreleased/mmootor-replace-input-csv-with-yaml/ILHNLNEV000009-T002-L01-F/ /hot/project/disease/HeadNeckTumor/HNSC-000084-LNMEvolution/pipelines/call-gSNP/2020-12-22/ILHNLNEV000009-T002-L01-F//gSNP/2021-01-22_11.01.06/ILHNLNEV000009/SAMtools-1.10_Picard-2.23.3/recalibrated_reheadered_bam_and_bai/ILHNLNEV000009-N001-B01-F_realigned_recalibrated_reheadered.bam /hot/project/disease/HeadNeckTumor/HNSC-000084-LNMEvolution/pipelines/call-gSNP/2020-12-22/ILHNLNEV000009-T002-L01-F//gSNP/2021-01-22_11.01.06/ILHNLNEV000009/SAMtools-1.10_Picard-2.23.3/recalibrated_reheadered_bam_and_bai/ILHNLNEV000009-T002-L01-F_realigned_recalibrated_reheadered.bam
DTB-266_WCDT /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/5.0.0/mmootor-release-5-0-0-rc-1/config/DTB-266_WCDT_F72.config - /hot/software/pipeline/pipeline-call-sSV/Nextflow/development/unreleased/mmootor-release-5-0-0-rc-1/DTB-266_WCDT/ /hot/data/unregistered/Quigley-Gebo-PRAD-SVMW/processed/output_call-gSNP/call-gSNP-DSL2-0.0.1/DTB-266/GATK-4.1.9.0/output/DTB-266_DNA_N_realigned_recalibrated_merged.bam /hot/data/unregistered/Quigley-Gebo-PRAD-SVMW/processed/output_call-gSNP/call-gSNP-DSL2-0.0.1/DTB-266/GATK-4.1.9.0/output/DTB-266_DNA_T_realigned_recalibrated_merged.bam