| .bcf |
Binary VCF output format from DELLY with somatic structural variants if found. |
| .bcf.csi |
CSI-format index for BCF files from DELLY. |
| .vcf |
Uncompressed VCF output from GRIDSS2 |
| .vcf.idx |
Index file for GRIDSS2 VCF |
| .vcf.bgz |
Block compressed gzip VCF outputs from GRIDSS2 somatic filtering |
| .vcf.bgz.tbi |
Index files for GRIDSS2 somatic filtered outputs |
| .vcf.gz |
Compressed VCF output format with somatic structural variants if found. |
| .vcf.gz.tbi |
TBI-format index for compressed VCF files. |
| .png |
SV Circos plot for individual SV callers (DELLY and Manta) as QC output. |
| report.html, timeline.html and trace.txt |
A Nextflow report, timeline and trace files. |
| *.log.command.* |
Process and sample specific logging files created by nextflow. |
| *.sha512 |
Generates SHA-512 hash to validate file integrity. |