Intermediates
| Output | Description |
|---|---|
| *assembly.bam | Breakend assembly BAM from GRIDSS2 |
| *assembly.bam.gridss.working | Directory containing BAM metrics from GRIDSS2 breakend assembly |
| *\ |
Directory containing BAM metrics from GRIDSS2 preprocessing of normal BAM |
| *\ |
Directory containing BAM metrics from GRIDSS2 preprocessing of tumor BAM |