References

1. Masella, A.P., Lalansingh, C.M., Sivasundaram, P. et al. BAMQL: a query language for extracting reads from BAM files. BMC Bioinformatics 17, 305 (2016)
2. BAMQL github
3. SAMTools
4. Calabrese C, Simone D, Diroma MA, et al. MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing. Bioinformatics. 2014;30(21):3115-3117
5. MToolBox github
6. mitoCaller
7. Ding J, Sidore C, Butler TJ, Wing MK, Qian Y, et al. (2015) Correction: Assessing Mitochondrial DNA Variation and Copy Number in Lymphocytes of ~2,000 Sardinians Using Tailored Sequencing Analysis Tools

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