How To Run

Note: Because this pipeline uses an image stored in the GitHub Container Registry, you must follow the steps listed in the Docker Introduction on Confluence to set up a PAT for your GitHub account and log into the registry on the cluster before running this pipeline.

Samples can be run by specifying file locations in the input.yaml and setting pipeline-specific parameters in the input.config.

Requirements

Currently supported Nextflow versions: v23.04.2

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