pipeline-call-gSV
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pipeline-call-gSV
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References
Rausch T, Zichner T, Schlattl A, Stütz AM, Benes V, Korbel JO. DELLY: structural variant discovery by integrated paired-end and split-read analysis. Bioinformatics. 2012;28(18):i333-i339. doi:10.1093/bioinformatics/bts378
Chen, X. et al. (2016) Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinformatics, 32, 1220-1222.
doi:10.1093/bioinformatics/btv710
VCFtools - vcf-validator
Real Time Genomics RTG Tools Operations Manual - vcfstats
Boutros Lab -CallSV Quality Control pipeline
The 1000 Genomes Project Consortium., Corresponding authors., Auton, A. et al. A global reference for human genetic variation. Nature 526, 68–74 (2015). https://doi.org/10.1038/nature15393
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