Outputs
| Output | Description |
|---|---|
.bcf |
Binary VCF output format with SVs if found. |
.vcf |
VCF output format with SVs if found. If output by Manta, these VCFs will be compressed. |
.bcf.csi |
CSI-format index for BAM files. |
.validate.txt |
output file from vcf-validator. |
.stats.txt |
output file from RTG Tools. |
report.html, timeline.html and trace.txt |
A Nextflow report, timeline and trace files. |
*.log.command.* |
Process and sample specific logging files created by nextflow. |
*.sha512 |
generates SHA-512 hash to validate file integrity. |