Outputs

Output and Output Parameter/Flag	Description
\.gvf	Intermediate GVF files.
\_variant_peptides.fasta	The complete variant peptide FASTA file.
split/\_.fasta	Split database FASTA files can be used for multi-step library search and FDR calculation.
encode/\_.{fasta,fasta.dict}	Encoded database FASTA files with header being replaced with UUID.
decoy/\_.{fasta,fasta.dict}	Decoy database FASTA files with either reversed or shuffled sequences.

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