Pipeline-align-DNA

Call DNA Align Nextflow Pipeline for BWA Alignment of Paired-End Reads

• Pipeline-align-DNA
• Overview
• How To Run
• Flow Diagram
• Pipeline Steps
  • 1. Alignment
  • 2. Convert Align SAM File to BAM Format
  • 3. Sort BAM Files in Coordinate or Queryname Order
  • 4. Mark Duplicates in BAM Files
  • 5. Index BAM Files
• Inputs
• Outputs
• Testing and Validation
  • Test Data Set
  • Validation \
  • Validation Tool
• References
• Discussions
• Contributors
• License