mergeFasta

MergeFasta merges a serious of database FASTA files into one. This is useful when working with multiplexed proteomic experiments such as TMT

Usage

usage: moPepGen mergeFasta [-h] -i ['<files>'] [['<files>'] ...] -o <file>
                           [--dedup-header] [--debug-level <value|number>]
                           [-q]

Merge multiple variant peptide FASTA files into one.

optional arguments:
  -h, --help            show this help message and exit
  -i ['<files>'] [['<files>'] ...], --input-path ['<files>'] [['<files>'] ...]
                        File path to the variant peptide FASTA files. Can take
                        multiple files. Valid formats: ['.fasta', '.fa']
                        (default: None)
  -o <file>, --output-path <file>
                        File path to the output file. Valid formats:
                        ['.fasta', '.fa'] (default: None)
  --dedup-header        Remove duplicate FASTA header entries after merging.
                        (default: False)
  --debug-level <value|number>
                        Debug level. (default: INFO)
  -q, --quiet           Quiet (default: False)

Arguments

-h, --help

show this help message and exit

-i, --input-path ['<files>'] Path

File path to the variant peptide FASTA files. Can take multiple files. Valid formats: ['.fasta', '.fa']

-o, --output-path <file> Path

File path to the output file. Valid formats: ['.fasta', '.fa']

--dedup-header

Remove duplicate FASTA header entries after merging.
Default: False

--debug-level <value|number> str

Debug level. str
Default: INFO

-q, --quiet

Quiet
Default: False