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  1. Description
  2. Installation
  3. Resources
  4. Getting help
  5. Citation information
  6. License

Description

OmicsQC is a statistical framework for integrating quality control metrics from multi-sample experiments such as cohort-level genomic profiling studies. Metrics are aggregated into quality scores which can be used to nominate samples for exclusion.

Created with BioRender.com
Created with BioRender.com

Installation

Using devtools in R:

library(devtools);
install_github('https://github.com/uclahs-cds/package-OmicsQC');

From source:

git clone https://github.com/uclahs-cds/package-OmicsQC.git
R CMD INSTALL package-OmicsQC

Resources

  • For a tutorial on how to use OmicsQC, check out our Vignette!
  • For detailed information about available functions, check out our Function Reference!
  • For updates, check out our Changelog!

Getting help

Looking for guidance or support with OmicsQC? Look no further.

  • Check out our Discussions page!
  • Submit bugs 🐛, suggest new features 🌸 or see current work 🦾 at our Issues page.

Citation information

You have stumbled upon an unpublished software 🤫 🤫 🤫. We are currently preparing the manuscript for OmicsQC. Please befriend us to learn more or check back later for updated citation information.

License

Authors: Hugo Anders Frelin, Paul C. Boutros ()

OmicsQC is licensed under the GNU General Public License version 2. See the file LICENSE.md for the terms of the GNU GPL license.

OmicsQC aggregates quality control metrics from multi-sample investigations and nominates samples for exclusion using an unbiased strategy.

Copyright (C) University of California Los Angeles (“Boutros Lab”) All rights reserved.

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.